JNB_12214 protein (Janibacter sp. HTCC2649) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

JNB_12214

Zinc metalloprotein (523 aa)

Predicted Functional Partners:

JNB_04350

0.853

argD

0.843

argG

0.835

JNB_02090

0.832

JNB_03815

0.812

JNB_00465

0.804

pyrC

0.741

JNB_17243

0.731

argB

0.725

dapF

0.724

Your Current Organism:

Janibacter sp. HTCC2649

NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JNB_00465	JNB_03815	JNB_00465	JNB_03815	RocD1	Putative glutamate synthase (NADPH) large subunit	0.733
JNB_00465	JNB_04350	JNB_00465	JNB_04350	RocD1	Ornithine carbamoyltransferase ; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	0.965
JNB_00465	JNB_12214	JNB_00465	JNB_12214	RocD1	Zinc metalloprotein	0.804
JNB_00465	JNB_17243	JNB_00465	JNB_17243	RocD1	Putative cystathionine beta-synthase	0.545
JNB_00465	argB	JNB_00465	JNB_04360	RocD1	NAG kinase	0.956
JNB_00465	argG	JNB_00465	JNB_04595	RocD1	Citrulline--aspartate ligase	0.792
JNB_00465	dapF	JNB_00465	JNB_05160	RocD1	Diaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan	0.583
JNB_02090	JNB_03815	JNB_02090	JNB_03815	Putative oxidoreductase	Putative glutamate synthase (NADPH) large subunit	0.697
JNB_02090	JNB_04350	JNB_02090	JNB_04350	Putative oxidoreductase	Ornithine carbamoyltransferase ; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	0.516
JNB_02090	JNB_12214	JNB_02090	JNB_12214	Putative oxidoreductase	Zinc metalloprotein	0.832
JNB_03815	JNB_00465	JNB_03815	JNB_00465	Putative glutamate synthase (NADPH) large subunit	RocD1	0.733
JNB_03815	JNB_02090	JNB_03815	JNB_02090	Putative glutamate synthase (NADPH) large subunit	Putative oxidoreductase	0.697
JNB_03815	JNB_04350	JNB_03815	JNB_04350	Putative glutamate synthase (NADPH) large subunit	Ornithine carbamoyltransferase ; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	0.482
JNB_03815	JNB_12214	JNB_03815	JNB_12214	Putative glutamate synthase (NADPH) large subunit	Zinc metalloprotein	0.812
JNB_03815	JNB_17243	JNB_03815	JNB_17243	Putative glutamate synthase (NADPH) large subunit	Putative cystathionine beta-synthase	0.962
JNB_03815	argB	JNB_03815	JNB_04360	Putative glutamate synthase (NADPH) large subunit	NAG kinase	0.727
JNB_03815	argD	JNB_03815	JNB_04355	Putative glutamate synthase (NADPH) large subunit	Acetylornithine aminotransferase	0.733
JNB_03815	argG	JNB_03815	JNB_04595	Putative glutamate synthase (NADPH) large subunit	Citrulline--aspartate ligase	0.882
JNB_03815	dapF	JNB_03815	JNB_05160	Putative glutamate synthase (NADPH) large subunit	Diaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan	0.637
JNB_03815	pyrC	JNB_03815	JNB_04025	Putative glutamate synthase (NADPH) large subunit	Dihydroorotase	0.901

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About