STRINGSTRING
JNB_13033 protein (Janibacter sp. HTCC2649) - STRING interaction network
"JNB_13033" - Uncharacterized protein in Janibacter sp. HTCC2649
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_13033Uncharacterized protein (426 aa)    
Predicted Functional Partners:
JNB_13038
Uncharacterized protein (46 aa)
              0.697
JNB_04065
Toxin VapC ; Toxic component of a toxin-antitoxin (TA) module. An RNase (139 aa)
 
          0.544
JNB_09174
Uncharacterized protein (131 aa)
   
          0.506
JNB_07914
Uncharacterized protein (65 aa)
 
          0.492
JNB_04070
Putative plasmid stability protein (85 aa)
   
          0.487
rplW
50S ribosomal protein L23 ; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (101 aa)
 
 
      0.471
JNB_07909
Toxin VapC ; Toxic component of a toxin-antitoxin (TA) module. An RNase (123 aa)
   
          0.456
JNB_12983
Uncharacterized protein (426 aa)
 
          0.443
JNB_12978
Uncharacterized protein (259 aa)
 
          0.433
rnhB
Ribonuclease HII ; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (261 aa)
              0.420
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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