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rpmH protein (Janibacter sp. HTCC2649) - STRING interaction network
"rpmH" - 50S ribosomal protein L34 in Janibacter sp. HTCC2649
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmH50S ribosomal protein L34 (55 aa)    
Predicted Functional Partners:
rpmA
50S ribosomal protein L27 (90 aa)
   
  0.990
rplM
50S ribosomal protein L13 ; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (147 aa)
   
  0.986
rplT
50S ribosomal protein L20 ; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (128 aa)
   
  0.986
rplQ
50S ribosomal protein L17 (237 aa)
     
  0.985
rplS
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (118 aa)
   
  0.985
rplD
50S ribosomal protein L4 ; Forms part of the polypeptide exit tunnel (331 aa)
     
  0.985
rpmG
50S ribosomal protein L33 (55 aa)
     
  0.984
rplP
50S ribosomal protein L16 ; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (139 aa)
     
  0.983
rpmB
50S ribosomal protein L28 (64 aa)
     
  0.982
rplU
50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (101 aa)
   
  0.982
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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