STRINGSTRING
JNB_13608 protein (Janibacter sp. HTCC2649) - STRING interaction network
"JNB_13608" - Single-stranded DNA-binding protein in Janibacter sp. HTCC2649
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_13608Single-stranded DNA-binding protein (205 aa)    
Predicted Functional Partners:
rpsF
30S ribosomal protein S6 ; Binds together with S18 to 16S ribosomal RNA (95 aa)
 
   
  0.952
rpsR
30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (73 aa)
   
   
  0.934
JNB_10179
DNA polymerase III subunits gamma and tau (799 aa)
   
 
  0.864
JNB_00995
Transfer protein Tra-like (1920 aa)
   
 
  0.851
JNB_00705
DNA-directed DNA polymerase (1204 aa)
   
 
  0.835
JNB_01680
DNA-directed DNA polymerase (1282 aa)
   
 
  0.835
JNB_06119
Single-strand DNA-binding protein (173 aa)
   
   
0.746
JNB_03775
DNA polymerase (889 aa)
   
 
  0.741
rpsD
30S ribosomal protein S4 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (202 aa)
   
   
  0.735
priA
ATP-dependent helicase PriA ; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA (682 aa)
       
 
  0.733
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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