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rpsR protein (Janibacter sp. HTCC2649) - STRING interaction network
"rpsR" - 30S ribosomal protein S18 in Janibacter sp. HTCC2649
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rpsR30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (73 aa)    
Predicted Functional Partners:
rpsF
30S ribosomal protein S6 ; Binds together with S18 to 16S ribosomal RNA (95 aa)
 
  0.999
rplJ
50S ribosomal protein L10 ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (211 aa)
     
  0.997
rpsK
30S ribosomal protein S11 ; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (134 aa)
   
  0.997
rpsB
30S ribosomal protein S2 (319 aa)
     
  0.997
rpsP
30S ribosomal protein S16 (227 aa)
   
  0.997
rpsC
30S ribosomal protein S3 ; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (272 aa)
   
  0.996
rpsJ
30S ribosomal protein S10 ; Involved in the binding of tRNA to the ribosomes (102 aa)
     
  0.996
rpsI
30S ribosomal protein S9 (172 aa)
   
  0.996
rpsD
30S ribosomal protein S4 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (202 aa)
   
  0.996
rpsE
30S ribosomal protein S5 ; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body (223 aa)
     
  0.996
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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