STRINGSTRING
JNB_15818 protein (Janibacter sp. HTCC2649) - STRING interaction network
"JNB_15818" - RNA polymerase sigma factor in Janibacter sp. HTCC2649
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_15818RNA polymerase sigma factor (182 aa)    
Predicted Functional Partners:
JNB_15823
Putative lipoprotein (214 aa)
 
          0.859
JNB_15813
Putative membrane protein (252 aa)
 
          0.838
JNB_11479
Uncharacterized protein (236 aa)
     
 
  0.751
JNB_15513
Putative RNA polymerase ECF-subfamily sigma factor (176 aa)
   
          0.704
JNB_03670
Putative RNA polymerase sigma factor (174 aa)
   
          0.609
JNB_17283
Putative RNA polymerase ECF-subfamily sigma factor (172 aa)
   
          0.567
JNB_07534
Putative RNA polymerase sigma factor (176 aa)
   
          0.556
JNB_15828
Putative membrane-bound oxidoreductase (523 aa)
 
          0.546
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1297 aa)
       
 
  0.544
JNB_16093
Uncharacterized protein (273 aa)
 
          0.536
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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