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deaD protein (Janibacter sp. HTCC2649) - STRING interaction network
"deaD" - Cold-shock DEAD box protein A in Janibacter sp. HTCC2649
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
deaDCold-shock DEAD box protein A ; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation (601 aa)    
Predicted Functional Partners:
pnp
Polynucleotide phosphorylase ; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (807 aa)
   
 
  0.839
JNB_15158
Oxaloacetate decarboxylase ; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (156 aa)
       
 
  0.832
JNB_00535
ATP-dependent helicase HrpA (1291 aa)
     
  0.826
JNB_05994
ATP-dependent DNA helicase (707 aa)
 
  0.819
rplA
50S ribosomal protein L1 ; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (240 aa)
   
  0.819
rpmD
50S ribosomal protein L30 (60 aa)
     
  0.816
JNB_14163
Putative cold shock protein (67 aa)
   
  0.810
JNB_11204
Cold shock protein (67 aa)
   
  0.810
rplR
50S ribosomal protein L18 ; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (122 aa)
     
  0.806
JNB_16714
Cold shock protein (134 aa)
   
  0.803
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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