JNB_17073 protein (Janibacter sp. HTCC2649) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

JNB_17073

ABC transporter, ATP-binding subunit (613 aa)

Predicted Functional Partners:

ispE

0.908

rplA

0.764

rplE

0.759

JNB_03675

0.647

JNB_17063

0.638

rpmG

0.637

rpsG

0.634

ksgA

0.625

JNB_07454

0.600

JNB_06504

0.600

Your Current Organism:

Janibacter sp. HTCC2649

NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JNB_03675	JNB_06504	JNB_03675	JNB_06504	30S ribosomal protein S1	ATP-dependent RNA helicase	0.653
JNB_03675	JNB_07454	JNB_03675	JNB_07454	30S ribosomal protein S1	Putative ATP-dependent RNA helicase	0.653
JNB_03675	JNB_17073	JNB_03675	JNB_17073	30S ribosomal protein S1	ABC transporter, ATP-binding subunit	0.647
JNB_03675	ksgA	JNB_03675	JNB_17058	30S ribosomal protein S1	S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	0.901
JNB_03675	rplA	JNB_03675	JNB_08434	30S ribosomal protein S1	50S ribosomal protein L1 ; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	0.913
JNB_03675	rplE	JNB_03675	JNB_08249	30S ribosomal protein S1	50S ribosomal protein L5 ; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs	0.852
JNB_03675	rpmG	JNB_03675	JNB_08554	30S ribosomal protein S1	50S ribosomal protein L33	0.659
JNB_03675	rpsG	JNB_03675	JNB_08339	30S ribosomal protein S1	30S ribosomal protein S7 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA	0.839
JNB_06504	JNB_03675	JNB_06504	JNB_03675	ATP-dependent RNA helicase	30S ribosomal protein S1	0.653
JNB_06504	JNB_17073	JNB_06504	JNB_17073	ATP-dependent RNA helicase	ABC transporter, ATP-binding subunit	0.600
JNB_06504	ksgA	JNB_06504	JNB_17058	ATP-dependent RNA helicase	S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	0.567
JNB_06504	rplA	JNB_06504	JNB_08434	ATP-dependent RNA helicase	50S ribosomal protein L1 ; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	0.819
JNB_06504	rplE	JNB_06504	JNB_08249	ATP-dependent RNA helicase	50S ribosomal protein L5 ; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs	0.762
JNB_06504	rpsG	JNB_06504	JNB_08339	ATP-dependent RNA helicase	30S ribosomal protein S7 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA	0.644
JNB_07454	JNB_03675	JNB_07454	JNB_03675	Putative ATP-dependent RNA helicase	30S ribosomal protein S1	0.653
JNB_07454	JNB_17073	JNB_07454	JNB_17073	Putative ATP-dependent RNA helicase	ABC transporter, ATP-binding subunit	0.600
JNB_07454	ksgA	JNB_07454	JNB_17058	Putative ATP-dependent RNA helicase	S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	0.567
JNB_07454	rplA	JNB_07454	JNB_08434	Putative ATP-dependent RNA helicase	50S ribosomal protein L1 ; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	0.819
JNB_07454	rplE	JNB_07454	JNB_08249	Putative ATP-dependent RNA helicase	50S ribosomal protein L5 ; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs	0.762
JNB_07454	rpsG	JNB_07454	JNB_08339	Putative ATP-dependent RNA helicase	30S ribosomal protein S7 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA	0.644

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About