STRINGSTRING
trpS protein (Janibacter sp. HTCC2649) - STRING interaction network
"trpS" - Tryptophanyl-tRNA synthetase in Janibacter sp. HTCC2649
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpSTryptophanyl-tRNA synthetase (343 aa)    
Predicted Functional Partners:
JNB_18098
Membrane protein ribonuclease BN-like family protein (370 aa)
   
        0.903
pheT
Phenylalanyl-tRNA synthetase beta subunit (845 aa)
   
   
  0.897
JNB_18093
Putative secreted protein (170 aa)
              0.871
argS
Arginyl-tRNA synthetase (548 aa)
   
   
  0.850
thrS
Threonyl-tRNA synthetase (661 aa)
   
   
  0.836
leuS
Leucyl-tRNA synthetase (969 aa)
   
   
  0.833
serS
Seryl-tRNA(Ser/Sec) synthetase ; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (426 aa)
   
 
  0.796
ileS
Isoleucyl-tRNA synthetase ; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (1157 aa)
   
   
  0.774
valS
Valyl-tRNA synthetase ; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner (895 aa)
   
   
  0.748
nusG
Transcription termination/antitermination protein NusG ; Participates in transcription elongation, termination and antitermination (316 aa)
   
   
  0.703
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
Server load: low (7%) [HD]