Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but resolution at 400 dpi
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as simple tabular text output:
TSV: tab separated values - can be opened in Excel
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| JNB_01505 | JNB_03775 | JNB_01505 | JNB_03775 | Uncharacterized protein | DNA polymerase | 0.961 |
| JNB_01505 | JNB_05869 | JNB_01505 | JNB_05869 | Uncharacterized protein | Endopeptidase Clp ; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins | 0.496 |
| JNB_01505 | JNB_05874 | JNB_01505 | JNB_05874 | Uncharacterized protein | Endopeptidase Clp ; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins | 0.496 |
| JNB_01505 | JNB_07399 | JNB_01505 | JNB_07399 | Uncharacterized protein | DNA helicase | 0.661 |
| JNB_01505 | JNB_17723 | JNB_01505 | JNB_17723 | Uncharacterized protein | DNA helicase | 0.607 |
| JNB_01505 | JNB_18763 | JNB_01505 | JNB_18763 | Uncharacterized protein | Putative uvrA-like protein | 0.883 |
| JNB_01505 | guaA | JNB_01505 | JNB_17598 | Uncharacterized protein | Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP | 0.708 |
| JNB_01505 | mfd | JNB_01505 | JNB_17153 | Uncharacterized protein | Transcription-repair-coupling factor ; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site | 0.517 |
| JNB_01505 | uvrB | JNB_01505 | JNB_03615 | Uncharacterized protein | Excinuclease ABC subunit B ; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.973 |
| JNB_01505 | uvrC | JNB_01505 | JNB_03530 | Uncharacterized protein | Excinuclease ABC subunit C ; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5’ and 3’ sides of the lesion. The N-terminal half is responsible for the 3’ incision and the C-terminal half is responsible for the 5’ incision | 0.623 |
| JNB_03775 | JNB_01505 | JNB_03775 | JNB_01505 | DNA polymerase | Uncharacterized protein | 0.961 |
| JNB_03775 | JNB_05869 | JNB_03775 | JNB_05869 | DNA polymerase | Endopeptidase Clp ; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins | 0.663 |
| JNB_03775 | JNB_05874 | JNB_03775 | JNB_05874 | DNA polymerase | Endopeptidase Clp ; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins | 0.663 |
| JNB_03775 | JNB_07399 | JNB_03775 | JNB_07399 | DNA polymerase | DNA helicase | 0.878 |
| JNB_03775 | JNB_17723 | JNB_03775 | JNB_17723 | DNA polymerase | DNA helicase | 0.903 |
| JNB_03775 | JNB_18763 | JNB_03775 | JNB_18763 | DNA polymerase | Putative uvrA-like protein | 0.793 |
| JNB_03775 | guaA | JNB_03775 | JNB_17598 | DNA polymerase | Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP | 0.720 |
| JNB_03775 | mfd | JNB_03775 | JNB_17153 | DNA polymerase | Transcription-repair-coupling factor ; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site | 0.887 |
| JNB_03775 | uvrB | JNB_03775 | JNB_03615 | DNA polymerase | Excinuclease ABC subunit B ; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.787 |
| JNB_03775 | uvrC | JNB_03775 | JNB_03530 | DNA polymerase | Excinuclease ABC subunit C ; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5’ and 3’ sides of the lesion. The N-terminal half is responsible for the 3’ incision and the C-terminal half is responsible for the 5’ incision | 0.949 |
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