JNB_18968 protein (Janibacter sp. HTCC2649) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

JNB_18968

Uncharacterized protein (275 aa)

Predicted Functional Partners:

JNB_18963

0.951

JNB_18973

0.920

JNB_18988

0.773

JNB_06649

0.772

JNB_18978

0.753

JNB_06629

0.750

JNB_06644

0.728

JNB_18983

0.708

JNB_06639

0.698

JNB_06634

0.661

Your Current Organism:

Janibacter sp. HTCC2649

NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649

Export your current network:

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... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
JNB_06629	JNB_06634	Uncharacterized protein	Uncharacterized protein	0.948
JNB_06629	JNB_06639	Uncharacterized protein	Putative membrane protein	0.961
JNB_06629	JNB_06644	Uncharacterized protein	Uncharacterized protein	0.943
JNB_06629	JNB_06649	Uncharacterized protein	Uncharacterized protein	0.948
JNB_06629	JNB_18963	Uncharacterized protein	Uncharacterized protein	0.732
JNB_06629	JNB_18968	Uncharacterized protein	Uncharacterized protein	0.750
JNB_06629	JNB_18973	Uncharacterized protein	Uncharacterized protein	0.769
JNB_06629	JNB_18978	Uncharacterized protein	Uncharacterized protein	0.755
JNB_06629	JNB_18983	Uncharacterized protein	Uncharacterized protein	0.749
JNB_06629	JNB_18988	Uncharacterized protein	Putative regulator	0.775
JNB_06634	JNB_06629	Uncharacterized protein	Uncharacterized protein	0.948
JNB_06634	JNB_06639	Uncharacterized protein	Putative membrane protein	0.971
JNB_06634	JNB_06644	Uncharacterized protein	Uncharacterized protein	0.957
JNB_06634	JNB_06649	Uncharacterized protein	Uncharacterized protein	0.963
JNB_06634	JNB_18968	Uncharacterized protein	Uncharacterized protein	0.661
JNB_06634	JNB_18973	Uncharacterized protein	Uncharacterized protein	0.699
JNB_06634	JNB_18978	Uncharacterized protein	Uncharacterized protein	0.490
JNB_06634	JNB_18983	Uncharacterized protein	Uncharacterized protein	0.755
JNB_06634	JNB_18988	Uncharacterized protein	Putative regulator	0.760
JNB_06639	JNB_06629	Putative membrane protein	Uncharacterized protein	0.961

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Coexpression

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