JNB_19153 protein (Janibacter sp. HTCC2649) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

JNB_19153

No annotation available (392 aa)

Predicted Functional Partners:

JNB_19263

0.541

JNB_12768

0.541

ligA

0.527

JNB_03805

0.525

JNB_03570

0.521

JNB_08769

0.446

JNB_17318

0.433

Your Current Organism:

Janibacter sp. HTCC2649

NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JNB_03570	JNB_03805	JNB_03570	JNB_03805	Uncharacterized protein	Pyruvate kinase	0.525
JNB_03570	JNB_19153	JNB_03570	JNB_19153	Uncharacterized protein	No annotation available	0.521
JNB_03805	JNB_03570	JNB_03805	JNB_03570	Pyruvate kinase	Uncharacterized protein	0.525
JNB_03805	JNB_12768	JNB_03805	JNB_12768	Pyruvate kinase	Uncharacterized protein	0.525
JNB_03805	JNB_17318	JNB_03805	JNB_17318	Pyruvate kinase	Uncharacterized protein	0.525
JNB_03805	JNB_19153	JNB_03805	JNB_19153	Pyruvate kinase	No annotation available	0.525
JNB_03805	JNB_19263	JNB_03805	JNB_19263	Pyruvate kinase	No annotation available	0.525
JNB_08769	JNB_19153	JNB_08769	JNB_19153	Putative secreted hydrolase	No annotation available	0.446
JNB_12768	JNB_03805	JNB_12768	JNB_03805	Uncharacterized protein	Pyruvate kinase	0.525
JNB_12768	JNB_19153	JNB_12768	JNB_19153	Uncharacterized protein	No annotation available	0.541
JNB_17318	JNB_03805	JNB_17318	JNB_03805	Uncharacterized protein	Pyruvate kinase	0.525
JNB_17318	JNB_19153	JNB_17318	JNB_19153	Uncharacterized protein	No annotation available	0.433
JNB_19153	JNB_03570	JNB_19153	JNB_03570	No annotation available	Uncharacterized protein	0.521
JNB_19153	JNB_03805	JNB_19153	JNB_03805	No annotation available	Pyruvate kinase	0.525
JNB_19153	JNB_08769	JNB_19153	JNB_08769	No annotation available	Putative secreted hydrolase	0.446
JNB_19153	JNB_12768	JNB_19153	JNB_12768	No annotation available	Uncharacterized protein	0.541
JNB_19153	JNB_17318	JNB_19153	JNB_17318	No annotation available	Uncharacterized protein	0.433
JNB_19153	JNB_19263	JNB_19153	JNB_19263	No annotation available	No annotation available	0.541
JNB_19153	ligA	JNB_19153	JNB_19158	No annotation available	Polydeoxyribonucleotide synthase [NAD(+)] ; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	0.527
JNB_19263	JNB_03805	JNB_19263	JNB_03805	No annotation available	Pyruvate kinase	0.525

page 1 of 2

Network

Neighborhood

Databases

Cooccurrence

Experiments

Fusion

Textmining

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About