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rimM protein (Janibacter sp. HTCC2649) - STRING interaction network
"rimM" - Ribosome maturation factor RimM in Janibacter sp. HTCC2649
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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rimMRibosome maturation factor RimM ; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (183 aa)    
Predicted Functional Partners:
trmD
tRNA [GM37] methyltransferase ; Specifically methylates guanosine-37 in various tRNAs (407 aa)
   
   
  0.983
rpsP
30S ribosomal protein S16 (227 aa)
   
   
  0.928
rpsS
30S ribosomal protein S19 ; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (93 aa)
     
 
  0.921
JNB_19768
Uncharacterized protein (200 aa)
              0.859
rplS
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (118 aa)
 
   
  0.777
JNB_19753
UPF0109 protein JNB_19753 (80 aa)
   
        0.732
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (218 aa)
     
   
  0.712
rplF
50S ribosomal protein L6 ; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (178 aa)
     
   
  0.700
JNB_19803
Signal peptidase I (281 aa)
 
        0.692
rpsF
30S ribosomal protein S6 ; Binds together with S18 to 16S ribosomal RNA (95 aa)
     
   
  0.690
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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