STRINGSTRING
JNB_19818 protein (Janibacter sp. HTCC2649) - STRING interaction network
"JNB_19818" - UPF0102 protein JNB_19818 in Janibacter sp. HTCC2649
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_19818UPF0102 protein JNB_19818 (119 aa)    
Predicted Functional Partners:
JNB_19823
Uncharacterized protein (514 aa)
 
        0.950
JNB_19828
SMF protein (390 aa)
 
        0.907
xerC
Tyrosine recombinase XerC (325 aa)
              0.870
rnhB
Ribonuclease HII ; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (261 aa)
   
      0.747
JNB_19838
Putative lipoprotein (396 aa)
              0.719
JNB_19813
Uncharacterized protein (104 aa)
   
        0.715
JNB_19803
Signal peptidase I (281 aa)
   
        0.681
JNB_19798
Signal peptidase I (201 aa)
   
        0.667
rplS
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (118 aa)
              0.583
JNB_16933
Uncharacterized protein (256 aa)
       
    0.525
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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