STRINGSTRING
JNB_20383 protein (Janibacter sp. HTCC2649) - STRING interaction network
"JNB_20383" - Uncharacterized protein in Janibacter sp. HTCC2649
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_20383Uncharacterized protein (662 aa)    
Predicted Functional Partners:
JNB_20428
Uncharacterized protein (249 aa)
          0.985
JNB_20388
Uncharacterized protein (167 aa)
 
          0.816
hemE
Uroporphyrinogen decarboxylase ; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (342 aa)
         
  0.730
JNB_07164
Uncharacterized protein (58 aa)
   
          0.722
JNB_20433
Uncharacterized protein (1003 aa)
       
    0.676
JNB_20378
Protein-L-isoaspartate carboxylmethyltransferase (206 aa)
              0.654
rimO
Ribosome maturation factor RimO ; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 (466 aa)
 
        0.570
JNB_03740
Uncharacterized protein (246 aa)
       
  0.566
JNB_09279
Putative uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase (541 aa)
 
     
  0.542
JNB_05659
Putative rod shape-determining protein (279 aa)
 
        0.536
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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