STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_2200Programmed cell death toxin YdcE; Toxic component of a type II toxin-antitoxin (TA) system. (115 aa)    
Predicted Functional Partners:
NSP_42730
Transcriptional regulator/antitoxin, MazE; Nsp42730; ORF_ID:nsp42730.
 
 
 0.824
NSP_2210
Hypothetical protein; Nsp2210; ORF_ID:nsp2210.
       0.773
psbB
Photosystem II CP47 protein (PsbB); One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily.
    
   0.769
NSP_16720
Prevent host death protein, Phd antitoxin; Nsp16720; ORF_ID:nsp16720.
  
 
 0.761
NSP_51880
Prevent host death protein, Phd antitoxin A; Nsp51880; ORF_ID:nsp51880.
  
 
 0.761
NSP_42740
Death on curing protein, Doc toxin; Toxic component of a type II toxin-antitoxin (TA) system.
  
     0.752
NSP_2220
DNA sulfur modification protein DndD; Nsp2220; ORF_ID:nsp2220.
       0.594
NSP_2190
DNA sulfur modification protein DndE; Nsp2190; ORF_ID:nsp2190.
       0.476
NSP_2180
Hypothetical protein; Nsp2180; ORF_ID:nsp2180.
       0.434
NSP_2230
3'-phosphoadenosine 5'-phosphosulfate sulfurtransferase DndC; Nsp2230; ORF_ID:nsp2230.
       0.431
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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