STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ELI_03245Type IV secretion system protein B11, putative; Part of the Type IV secretion system. Belongs to the GSP E family. (337 aa)    
Predicted Functional Partners:
ELI_01505
COG4965 Flp pilus assembly protein TadB.
 
  
 0.907
ELI_01500
COG2064 Flp pilus assembly protein TadC.
 
  
 0.877
ELI_03240
Type IV secretion system protein B10, putative; COG2948 Type IV secretory pathway, VirB10 components.
 
   
 0.870
ELI_03225
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
 
   
 0.869
ELI_03235
Type IV secretion system protein B9, putative; COG3504 Type IV secretory pathway, VirB9 components.
 
   
 0.860
ELI_01525
COG3745 Flp pilus assembly protein CpaB.
 
  
 0.842
ELI_03230
Hypothetical protein; COG3704 Type IV secretory pathway, VirB6 components.
 
     0.820
ELI_03220
Type IV secretion system protein B3, putative; COG3702 Type IV secretory pathway, VirB3 components.
 
   
 0.814
ELI_01520
Type II secretion system protein; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
  
 0.810
ELI_03215
Hypothetical protein; COG3838 Type IV secretory pathway, VirB2 components (pilins).
 
   
 0.789
Your Current Organism:
Erythrobacter litoralis
NCBI taxonomy Id: 314225
Other names: E. litoralis HTCC2594, Erythrobacter litoralis HTCC2594, Erythrobacter litoralis str. HTCC2594, Erythrobacter litoralis strain HTCC2594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.