STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ELI_07405Zinc-dependent metallopeptidase. (615 aa)    
Predicted Functional Partners:
ELI_07400
Hypothetical protein.
 
     0.839
rimK
COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase).
       0.820
ELI_07395
COG4067 Uncharacterized protein conserved in archaea.
       0.820
ELI_03045
Peptidase, M28 family protein; COG2234 Predicted aminopeptidases.
 
   
 0.683
ELI_07415
Hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
     
 0.650
ELI_07420
DSBA oxidoreductase; COG3917 2-hydroxychromene-2-carboxylate isomerase.
       0.644
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
     
 0.641
ELI_07410
Hypothetical protein; COG1823 Predicted Na+/dicarboxylate symporter.
       0.640
ELI_07425
Hypothetical protein.
       0.593
ELI_12345
Hypothetical protein; COG2234 Predicted aminopeptidases.
 
   
 0.543
Your Current Organism:
Erythrobacter litoralis
NCBI taxonomy Id: 314225
Other names: E. litoralis HTCC2594, Erythrobacter litoralis HTCC2594, Erythrobacter litoralis str. HTCC2594, Erythrobacter litoralis strain HTCC2594
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