STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
EAQ05484.1Pca operon transcriptional activator PcaQ; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
EAQ05485.1
COG3947 Response regulator containing CheY-like receiver and SARP domains.
  
    0.782
EAQ05479.1
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
     0.730
EAQ05480.1
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
     0.704
EAQ05481.1
4-carboxymuconolactone decarboxylase; COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
     0.669
EAQ05483.1
4-hydroxybenzoate 3-monooxygenase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
     0.665
EAQ05482.1
3-oxoadipate enol-lactone hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.639
EAQ05487.1
Hypothetical protein; COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase.
 
     0.596
EAQ05583.1
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
  
     0.552
EAQ05475.1
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
       0.549
EAQ05476.1
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
       0.549
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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