EAQ06686.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ06686.1

COG0347 Nitrogen regulatory protein PII. (102 aa)

Predicted Functional Partners:

EAQ06687.1

0.966

EAQ06656.1

0.963

EAQ06688.1

0.837

EAQ06392.1

0.819

EAQ06041.1

0.815

argB

0.791

EAQ05959.1

0.725

EAQ08212.1

0.622

glnD

0.577

nadE

0.559

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05959.1	EAQ06686.1	SKA53_07636	SKA53_14101	Hypothetical protein.	COG0347 Nitrogen regulatory protein PII.	0.725
EAQ06041.1	EAQ06686.1	SKA53_08046	SKA53_14101	Hypothetical protein; COG3329 Predicted permease.	COG0347 Nitrogen regulatory protein PII.	0.815
EAQ06392.1	EAQ06656.1	SKA53_04873	SKA53_13951	Nitrogen regulation protein NtrB; COG3852 Signal transduction histidine kinase, nitrogen specific.	Ammonium transporter; COG0004 Ammonia permease.	0.790
EAQ06392.1	EAQ06686.1	SKA53_04873	SKA53_14101	Nitrogen regulation protein NtrB; COG3852 Signal transduction histidine kinase, nitrogen specific.	COG0347 Nitrogen regulatory protein PII.	0.819
EAQ06392.1	EAQ08212.1	SKA53_04873	SKA53_10819	Nitrogen regulation protein NtrB; COG3852 Signal transduction histidine kinase, nitrogen specific.	Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.	0.420
EAQ06392.1	glnD	SKA53_04873	SKA53_14731	Nitrogen regulation protein NtrB; COG3852 Signal transduction histidine kinase, nitrogen specific.	PII uridylyl-transferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.	0.603
EAQ06656.1	EAQ06392.1	SKA53_13951	SKA53_04873	Ammonium transporter; COG0004 Ammonia permease.	Nitrogen regulation protein NtrB; COG3852 Signal transduction histidine kinase, nitrogen specific.	0.790
EAQ06656.1	EAQ06686.1	SKA53_13951	SKA53_14101	Ammonium transporter; COG0004 Ammonia permease.	COG0347 Nitrogen regulatory protein PII.	0.963
EAQ06656.1	EAQ08212.1	SKA53_13951	SKA53_10819	Ammonium transporter; COG0004 Ammonia permease.	Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.	0.862
EAQ06656.1	glnD	SKA53_13951	SKA53_14731	Ammonium transporter; COG0004 Ammonia permease.	PII uridylyl-transferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.	0.509
EAQ06656.1	nadE	SKA53_13951	SKA53_08994	Ammonium transporter; COG0004 Ammonia permease.	NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.	0.599
EAQ06686.1	EAQ05959.1	SKA53_14101	SKA53_07636	COG0347 Nitrogen regulatory protein PII.	Hypothetical protein.	0.725
EAQ06686.1	EAQ06041.1	SKA53_14101	SKA53_08046	COG0347 Nitrogen regulatory protein PII.	Hypothetical protein; COG3329 Predicted permease.	0.815
EAQ06686.1	EAQ06392.1	SKA53_14101	SKA53_04873	COG0347 Nitrogen regulatory protein PII.	Nitrogen regulation protein NtrB; COG3852 Signal transduction histidine kinase, nitrogen specific.	0.819
EAQ06686.1	EAQ06656.1	SKA53_14101	SKA53_13951	COG0347 Nitrogen regulatory protein PII.	Ammonium transporter; COG0004 Ammonia permease.	0.963
EAQ06686.1	EAQ06687.1	SKA53_14101	SKA53_14106	COG0347 Nitrogen regulatory protein PII.	Membrane protein; COG3329 Predicted permease.	0.966
EAQ06686.1	EAQ06688.1	SKA53_14101	SKA53_14111	COG0347 Nitrogen regulatory protein PII.	Carbonic anhydrase, putative; COG0288 Carbonic anhydrase.	0.837
EAQ06686.1	EAQ08212.1	SKA53_14101	SKA53_10819	COG0347 Nitrogen regulatory protein PII.	Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.	0.622
EAQ06686.1	argB	SKA53_14101	SKA53_13526	COG0347 Nitrogen regulatory protein PII.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.791
EAQ06686.1	glnD	SKA53_14101	SKA53_14731	COG0347 Nitrogen regulatory protein PII.	PII uridylyl-transferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.	0.577