STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kuKu domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (288 aa)    
Predicted Functional Partners:
EAR50857.1
Hypothetical protein; COG1793 ATP-dependent DNA ligase.
 
  
 0.988
EAR51244.1
Hypothetical protein; COG1793 ATP-dependent DNA ligase.
 
  
 0.951
EAR51245.1
Hypothetical protein; COG1793 ATP-dependent DNA ligase.
 
  
 0.951
EAR50855.1
Hypothetical protein; COG0428 Predicted divalent heavy-metal cations transporter.
       0.536
EAR52914.1
Putative DNA topoisomerase I protein; COG3569 Topoisomerase IB.
 
    0.522
EAR50854.1
ycfI, putative structural proteins; COG3685 Uncharacterized protein conserved in bacteria.
 
    0.478
EAR51584.1
Hypothetical protein.
 
     0.441
EAR50853.1
Probable osmotically inducible sensory protein; COG2823 Predicted periplasmic or secreted lipoprotein.
 
     0.416
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.