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R2601_00060 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00060" - Putative malonate transporter, mdcF, AEC family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00060Putative malonate transporter, mdcF, AEC family protein (317 aa)    
Predicted Functional Partners:
R2601_00055
Putative dehydrogenase protein (309 aa)
              0.794
R2601_24799
Predicted permease (311 aa)
   
          0.777
R2601_19599
DNA polymerase III subunit delta (372 aa)
 
          0.638
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
   
          0.601
R2601_00080
Uncharacterized protein (207 aa)
              0.590
R2601_00075
Putative permease protein (430 aa)
              0.590
R2601_00070
Hydantoin utilization protein A (HyuA) (710 aa)
              0.590
R2601_00065
N-methylhydantoinase B (554 aa)
              0.590
R2601_00085
Putative periplasmic binding protein (335 aa)
              0.582
R2601_14750
NADP-dependent malic enzyme (751 aa)
         
  0.557
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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