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R2601_00105 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00105" - Endoribonuclease L-PSP family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00105Endoribonuclease L-PSP family protein (114 aa)    
Predicted Functional Partners:
rph
tRNA nucleotidyltransferase ; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (237 aa)
       
    0.647
R2601_00110
Putative transcriptional regulator, lysR family protein (310 aa)
              0.598
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
        0.565
fusA
Elongation factor G ; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (707 aa)
     
    0.558
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (906 aa)
              0.554
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
     
 
  0.552
R2601_01360
Pyridoxal-phosphate dependent enzyme (321 aa)
 
        0.525
R2601_26096
Succinate-semialdehyde dehydrogenase (485 aa)
   
  0.507
R2601_26081
Putative aldehyde dehydrogenase transmembrane protein (507 aa)
   
  0.507
R2601_23228
Methylmalonic acid semialdehyde dehydrogenase (499 aa)
   
  0.507
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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