STRINGSTRING
R2601_00130 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00130" - Cytochrome c heme-binding site:Penicillin amidase in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00130Cytochrome c heme-binding site-Penicillin amidase (325 aa)    
Predicted Functional Partners:
R2601_00125
Putative GntR-family transcriptional regulator (127 aa)
 
          0.716
R2601_00655
High-affinity branched-chain amino acid transport system permease protein livh / high-affinity branched-chain amino acid (599 aa)
   
          0.654
R2601_26206
Penicillin amidase family protein (822 aa)
   
          0.638
R2601_00665
Leu/Ile/Val-binding protein family-Extracellular ligand-binding receptor (398 aa)
   
          0.484
R2601_20249
Putative D-alanyl-D-alanine carboxypeptidase (520 aa)
 
          0.458
R2601_19689
Virulence-associated protein E (289 aa)
   
          0.431
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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