STRINGSTRING
R2601_00160 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00160" - Two-component system sensor protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00160Two-component system sensor protein (807 aa)    
Predicted Functional Partners:
R2601_00155
Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain (222 aa)
 
  0.997
R2601_08371
Dihydrolipoamide acetyltransferase (461 aa)
   
  0.974
R2601_18715
Chemotaxis multidomain, CheB methylesterase/CheR, Methylase (1154 aa)
       
  0.966
R2601_10949
DNA-binding response regulator PetR (233 aa)
 
  0.963
R2601_24944
Phosphate regulon transcriptional regulatory protein PhoB (229 aa)
 
  0.962
R2601_04818
Two-component system, regulatory protein (226 aa)
 
  0.962
R2601_06988
DNA-binding response regulator (240 aa)
 
  0.958
R2601_23830
DNA-binding response regulator CtrA (179 aa)
 
  0.958
R2601_19984
DNA-binding response regulator (222 aa)
 
  0.955
R2601_09787
Cell cycle transcriptional regulator CtrA (231 aa)
 
  0.954
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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