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R2601_00165 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00165" - Transcriptional regulator, LacI family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00165Transcriptional regulator, LacI family protein (338 aa)    
Predicted Functional Partners:
R2601_00185
ABC sugar (Ribose) transporter, inner membrane subunit (335 aa)
 
 
  0.911
R2601_00190
ABC ribose transporter, periplasmic solute-binding protein (311 aa)
 
 
  0.861
R2601_00180
ABC sugar transporter, ATPase subunit (501 aa)
   
 
  0.860
R2601_20781
Ribose kinase protein (296 aa)
 
  0.851
R2601_14755
Ribokinase (292 aa)
 
 
  0.829
R2601_00175
Predicted oxidoreductase, Gfo/Idh/MocA family protein (374 aa)
 
     
  0.796
R2601_22681
2-dehydro-3-deoxygluconokinase (308 aa)
 
 
  0.785
R2601_00170
Uncharacterized protein (352 aa)
 
     
  0.758
R2601_16932
Putative Fructokinase (299 aa)
 
 
  0.756
R2601_16860
Phosphocarrier protein HPr (92 aa)
     
 
  0.750
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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