STRINGSTRING
R2601_00175 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00175" - Predicted oxidoreductase, Gfo/Idh/MocA family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00175Predicted oxidoreductase, Gfo/Idh/MocA family protein (374 aa)    
Predicted Functional Partners:
R2601_00170
Uncharacterized protein (352 aa)
 
 
  0.991
R2601_00185
ABC sugar (Ribose) transporter, inner membrane subunit (335 aa)
 
          0.938
R2601_00180
ABC sugar transporter, ATPase subunit (501 aa)
              0.874
R2601_05558
Putative D-tagatose 3-epimerase (295 aa)
 
 
  0.870
R2601_00190
ABC ribose transporter, periplasmic solute-binding protein (311 aa)
 
          0.857
R2601_00165
Transcriptional regulator, LacI family protein (338 aa)
 
     
  0.796
R2601_22242
Putative Zn-dependent dehydrogenase (334 aa)
 
  0.738
R2601_22327
Aminotransferase, DegT/DnrJ/EryC1/StrS family protein (410 aa)
   
 
  0.731
R2601_05613
Aminotransferase, DegT/DnrJ/EryC1/StrS family protein (403 aa)
   
 
  0.731
tdh
L-threonine 3-dehydrogenase (345 aa)
   
  0.696
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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