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R2601_00225 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00225" - Binding-protein-dependent transport systems inner membrane component in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00225Binding-protein-dependent transport systems inner membrane component (200 aa)    
Predicted Functional Partners:
R2601_00215
Peptide ABC transporter, ATP-binding protein (331 aa)
  0.993
R2601_00220
Peptide ABC transporter, permease protein (298 aa)
  0.993
R2601_00210
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal (327 aa)
  0.992
R2601_05818
Oligopeptide/dipeptide ABC transporter, permease protein (298 aa)
  0.953
R2601_15697
Oligopeptide ABC transporter permease protein (299 aa)
  0.953
R2601_01190
Putative oligopeptide ABC transporter, permease component (270 aa)
  0.953
R2601_01493
ABC transporter, membrane spanning protein (Oligopeptide) (295 aa)
  0.952
R2601_03038
ABC transporter, membrane spanning protein (300 aa)
  0.951
R2601_19729
ABC transporter, membrane spanning protein (Oligopeptide) (314 aa)
  0.950
R2601_21492
ABC peptide transporter, inner membrane subunit (296 aa)
  0.950
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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