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R2601_00235 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00235" - Peptide ABC transporter, periplasmic peptide-binding protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00235Peptide ABC transporter, periplasmic peptide-binding protein (489 aa)    
Predicted Functional Partners:
R2601_00220
Peptide ABC transporter, permease protein (298 aa)
 
  0.936
R2601_00225
Binding-protein-dependent transport systems inner membrane component (200 aa)
 
  0.933
R2601_00230
Peptide ABC transporter, permease protein (110 aa)
 
          0.904
R2601_00210
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal (327 aa)
 
 
  0.811
R2601_18138
ABC transporter permease protein (325 aa)
 
 
  0.807
R2601_01190
Putative oligopeptide ABC transporter, permease component (270 aa)
  0.783
R2601_00215
Peptide ABC transporter, ATP-binding protein (331 aa)
 
 
  0.778
R2601_19724
Probable dipeptide transmembrane abc transporter protein (324 aa)
 
 
  0.767
R2601_05818
Oligopeptide/dipeptide ABC transporter, permease protein (298 aa)
 
  0.761
R2601_00200
Uncharacterized protein (463 aa)
 
     
  0.757
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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