STRINGSTRING
R2601_00255 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00255" - FAD linked oxidase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00255FAD linked oxidase (946 aa)    
Predicted Functional Partners:
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
  0.972
R2601_14750
NADP-dependent malic enzyme (751 aa)
   
 
  0.969
R2601_10082
Malic enzyme (759 aa)
   
 
  0.969
R2601_22621
L-lactate dehydrogenase, putative (388 aa)
   
 
  0.968
R2601_06423
L-lactate dehydrogenase (380 aa)
   
 
  0.968
R2601_01758
Putative L-lactate dehydrogenase (423 aa)
   
 
  0.968
R2601_19904
Phosphoglycerate dehydrogenase (335 aa)
   
 
  0.938
R2601_16922
D-isomer specific 2-hydroxyacid dehydrogenase family protein (319 aa)
   
 
  0.938
R2601_15150
2-hydroxyacid dehydrogenase (328 aa)
   
 
  0.938
R2601_01748
Putative dehydrogenase protein (305 aa)
   
 
  0.938
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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