STRINGSTRING
R2601_00265 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00265" - Probable hydrolase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00265Probable hydrolase (296 aa)    
Predicted Functional Partners:
fliQ
Flagellar biosynthesis protein Q (89 aa)
              0.745
R2601_00285
Uncharacterized protein (274 aa)
              0.745
flhA
Flagellar biosynthesis protein A (697 aa)
              0.745
R2601_00275
Flagellar biosynthesis protein (251 aa)
              0.745
flhB
Flagellar biosynthesis protein B (375 aa)
              0.745
fliE
Flagellar hook-basal body complex protein FliE (109 aa)
              0.700
flgC
Flagellar basal-body rod protein FlgC (136 aa)
              0.677
R2601_00305
Flagellar basal body rod protein FlgB ; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body (133 aa)
              0.658
R2601_00310
Flagellum-specific ATP synthase (418 aa)
              0.474
rsmH
rRNA (cytosine-N(4)-)-methyltransferase RsmH ; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA (330 aa)
   
          0.440
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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