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R2601_00340 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00340" - Flagellar motor protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00340Flagellar motor protein (298 aa)    
Predicted Functional Partners:
R2601_14605
Chemotaxis protein MotB (277 aa)
 
  0.998
R2601_00365
OmpA/MotB (329 aa)
 
  0.998
R2601_11444
Flagellar motor protein (634 aa)
   
  0.981
R2601_22117
Possible outer membrane protein, OmpA family (452 aa)
   
  0.949
R2601_16020
Uncharacterized protein (465 aa)
   
  0.949
fliF
Flagellar M-ring protein ; The M ring may be actively involved in energy transduction (535 aa)
 
   
  0.916
R2601_15337
Flagellar M-ring protein ; The M ring may be actively involved in energy transduction (546 aa)
 
   
  0.914
R2601_14585
Basal body P-ring protein ; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation (370 aa)
 
   
  0.867
R2601_00330
Flagellar motor protein (142 aa)
              0.863
R2601_00335
Uncharacterized protein (89 aa)
              0.859
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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