STRINGSTRING
R2601_00355 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00355" - Predicted transcriptional regulator in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00355Predicted transcriptional regulator (91 aa)    
Predicted Functional Partners:
R2601_00360
Putative mucR family transcriptional regulatory protein (142 aa)
 
          0.765
R2601_10399
Uncharacterized protein (74 aa)
   
          0.720
R2601_00350
Uncharacterized protein (221 aa)
 
          0.690
R2601_00365
OmpA/MotB (329 aa)
              0.564
R2601_26001
Uncharacterized protein (193 aa)
   
          0.527
R2601_23650
CHAP (183 aa)
   
          0.457
R2601_13644
Uncharacterized protein (679 aa)
   
          0.405
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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