STRINGSTRING
R2601_00365 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00365" - OmpA/MotB in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00365OmpA/MotB (329 aa)    
Predicted Functional Partners:
R2601_00340
Flagellar motor protein (298 aa)
 
  0.998
R2601_14580
Flagellar motor protein (289 aa)
 
  0.998
fliF
Flagellar M-ring protein ; The M ring may be actively involved in energy transduction (535 aa)
 
   
  0.923
fliG
Flagellar motor switch protein G (354 aa)
 
   
  0.920
flgC
Flagellar basal-body rod protein FlgC (136 aa)
 
   
  0.910
R2601_00510
Flagellar motor switch protein FliM ; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation (313 aa)
 
   
  0.904
R2601_00275
Flagellar biosynthesis protein (251 aa)
 
 
 
  0.903
R2601_00410
Flagellar basal body protein (249 aa)
 
 
  0.897
R2601_00405
Distal rod protein (261 aa)
 
 
  0.895
R2601_00385
Basal-body rod modification protein FlgD ; Required for flagellar hook formation. May act as a scaffolding protein (223 aa)
 
   
  0.894
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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