STRINGSTRING
R2601_00530 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00530" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00530Uncharacterized protein (407 aa)    
Predicted Functional Partners:
R2601_21957
Xanthine dehydrogenase family protein, small/large subunits (905 aa)
   
 
  0.917
R2601_11831
Dihydropyrimidine dehydrogenase (434 aa)
   
 
  0.882
R2601_18268
Uracil phosphoribosyltransferase ; Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate (165 aa)
   
 
  0.844
R2601_16485
Cytosine deaminase (429 aa)
   
   
 
0.809
R2601_11836
Pyridine nucleotide-disulphide oxidoreductase family protein (426 aa)
   
 
  0.793
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
 
    0.790
psuG
Pseudouridine-5’-phosphate glycosidase ; Catalyzes the reversible cleavage of pseudouridine 5’- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway (305 aa)
     
 
    0.788
R2601_18248
Thymidine phosphorylase (429 aa)
       
    0.788
R2601_23173
N-methylhydantoinase (ATP-hydrolyzing) B 1 (532 aa)
       
    0.783
R2601_21967
N-methylhydantoinase B (558 aa)
       
    0.783
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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