STRINGSTRING
R2601_00570 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00570" - Transcriptional regulatory protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00570Transcriptional regulatory protein (308 aa)    
Predicted Functional Partners:
R2601_03423
Regulatory protein, LysR-LysR, substrate-binding (345 aa)
   
     
  0.797
R2601_20074
Transcriptional regulatory protein (308 aa)
   
     
  0.796
R2601_23630
Probable transcription regulator protein (299 aa)
   
     
  0.793
R2601_20966
Transcriptional regulator, LysR family protein (290 aa)
   
     
  0.792
R2601_12800
Transcriptional regulator, LysR family protein (306 aa)
   
   
  0.778
R2601_13144
Pca operon transcriptional activator PcaQ (175 aa)
   
          0.772
R2601_17424
RuBisCO operon transcriptional regulator, CbbR (308 aa)
   
          0.768
R2601_19899
Transcriptional regulator, LysR family protein (296 aa)
   
          0.767
R2601_05763
Transcriptional regulator (305 aa)
   
          0.762
R2601_02603
Transcriptional Regulator, LysR family protein (297 aa)
   
          0.751
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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