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R2601_00735 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00735" - Sarcosine oxidase, gamma subunit family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00735Sarcosine oxidase, gamma subunit family protein (186 aa)    
Predicted Functional Partners:
R2601_00725
Sarcosine oxidase, delta subunit family protein (93 aa)
 
   
    0.976
R2601_00730
Sarcosine oxidase, alpha subunit family protein (980 aa)
 
   
    0.919
R2601_00720
Sarcosine oxidase, beta subunit family protein (416 aa)
 
   
    0.881
R2601_14795
Uncharacterized protein (246 aa)
   
          0.698
R2601_24694
TfoX domain protein (114 aa)
   
          0.614
R2601_00715
Transcription regulator (314 aa)
              0.598
R2601_04688
Succinoglycan biosynthesis protein (391 aa)
   
          0.557
R2601_13885
Transporter, AcrB/AcrD/AcrF family protein (1129 aa)
   
          0.535
R2601_13890
Efflux transporter, RND family, MFP subunit (487 aa)
   
          0.524
R2601_07941
Glutamine synthetase III (438 aa)
   
          0.519
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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