STRINGSTRING
R2601_00800 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00800" - Replication protein, putative in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00800Replication protein, putative (365 aa)    
Predicted Functional Partners:
R2601_00795
Replication protein (434 aa)
 
          0.969
R2601_17334
Uncharacterized protein (156 aa)
   
          0.693
R2601_12625
3-carboxy-cis,cis-muconate cycloisomerase (317 aa)
   
          0.671
R2601_08863
Uncharacterized protein (69 aa)
   
          0.669
R2601_09697
Uncharacterized protein (266 aa)
   
          0.627
R2601_18273
Uncharacterized protein (455 aa)
   
          0.593
R2601_10244
Chorismate mutase family protein (391 aa)
   
          0.591
R2601_00620
Uncharacterized protein (337 aa)
   
          0.567
R2601_13169
Uncharacterized protein (179 aa)
   
          0.542
R2601_00400
Flagella basal body P-ring formation protein FlgA ; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly (220 aa)
   
          0.539
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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