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R2601_00805 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00805" - Sigma-54 dependent transcriptional regulator in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00805Sigma-54 dependent transcriptional regulator (434 aa)    
Predicted Functional Partners:
R2601_00810
Sensor histidine kinase (597 aa)
 
   
  0.995
R2601_24460
C4-dicarboxylate transport sensor protein DctB, putative (567 aa)
 
   
  0.957
R2601_26261
Nitrogen regulation protein NtrB (361 aa)
 
  0.949
R2601_22392
C4-dicarboxylate transport sensor protein (583 aa)
 
   
  0.948
R2601_26251
Nitrogen regulation protein ntrY (740 aa)
 
 
  0.932
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
 
0.918
R2601_00820
TRAP-T family transporter with fused DctQ/DctM subunits (698 aa)
       
    0.887
R2601_24909
Phosphate regulon sensor histidine kinase, putative (346 aa)
 
  0.873
R2601_06138
Probable sensor histidine kinase of two-component system (530 aa)
 
  0.859
R2601_00815
Uncharacterized protein (132 aa)
              0.859
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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