STRINGSTRING
R2601_00880 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00880" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00880Uncharacterized protein (185 aa)    
Predicted Functional Partners:
R2601_00875
Putative periplasmic binding protein (322 aa)
 
          0.944
R2601_00885
Putative transmembrane protein (418 aa)
 
          0.878
R2601_00870
Putative oxidoreductase protein (253 aa)
 
          0.706
R2601_00580
C4-dicarboxylate transport system permease small protein (190 aa)
   
          0.539
R2601_00890
Transcriptional regulatory protein (329 aa)
 
          0.517
R2601_01593
Hypothetical LysR, Transcriptional regulator (295 aa)
   
          0.483
R2601_16095
Uncharacterized protein (177 aa)
   
          0.482
R2601_22397
C4-dicarboxylate transport transcriptional regulatory protein (841 aa)
   
          0.477
R2601_15407
Uncharacterized protein (105 aa)
   
          0.473
R2601_01768
TRm24 putative transposase (164 aa)
   
          0.469
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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