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R2601_00960 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00960" - Carbohydrate kinase, FGGY in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00960Carbohydrate kinase, FGGY (535 aa)    
Predicted Functional Partners:
R2601_00970
D-erythrulose 4-phosphate dehydrogenase (310 aa)
 
   
  0.984
R2601_00965
Glycerol-3-phosphate dehydrogenase (502 aa)
 
 
  0.954
R2601_00975
Putative sugar-binding domain (311 aa)
 
   
  0.935
R2601_00980
Bacterial regulatory protein, DeoR family (255 aa)
 
     
  0.832
R2601_01015
L-idonate 5-dehydrogenase (349 aa)
 
 
  0.800
R2601_00940
Periplasmic binding protein/LacI transcriptional regulator (316 aa)
 
     
  0.773
R2601_22242
Putative Zn-dependent dehydrogenase (334 aa)
   
 
  0.766
tdh
L-threonine 3-dehydrogenase (345 aa)
   
 
  0.766
R2601_21442
L-iditol 2-dehydrogenase (342 aa)
   
 
  0.766
R2601_03723
Zinc-containing alcohol dehydrogenase superfamily protein (104 aa)
   
 
  0.766
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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