STRINGSTRING
R2601_01100 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01100" - C4-dicarboxylate transport system permease small protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01100C4-dicarboxylate transport system permease small protein (162 aa)    
Predicted Functional Partners:
R2601_01105
C4-dicarboxylate transport system permease large protein (442 aa)
 
   
    0.993
R2601_01095
TRAP dicarboxylate transporter-DctP subunit (333 aa)
 
   
    0.991
R2601_01110
Oxidoreductase (254 aa)
              0.836
R2601_01075
Uncharacterized protein (280 aa)
 
          0.695
R2601_00580
C4-dicarboxylate transport system permease small protein (190 aa)
   
          0.582
R2601_14350
Oxidoreductase domain protein (204 aa)
   
          0.552
R2601_01090
Putative transcription regulator protein (267 aa)
 
          0.548
R2601_13214
Uncharacterized protein (169 aa)
   
          0.478
R2601_25341
Membrane protein (293 aa)
   
          0.456
R2601_00875
Putative periplasmic binding protein (322 aa)
   
          0.450
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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