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R2601_01120 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01120" - Probable ABC transporter sugar-binding protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01120Probable ABC transporter sugar-binding protein (315 aa)    
Predicted Functional Partners:
R2601_01135
Probable sugar ABC transporter permease protein (355 aa)
 
  0.999
R2601_01130
Ribose ABC transporter, ATP-binding protein (515 aa)
 
  0.999
R2601_00945
Bacterial inner-membrane translocator-Sodium-dicarboxylate symporter (344 aa)
 
  0.979
R2601_00950
Ribose ABC transporter, ATP-binding protein (513 aa)
 
  0.956
R2601_01988
ABC transporter, membrane spanning protein (Ribose) (307 aa)
 
  0.945
R2601_02653
Putative sugar ABC transporter permease protein (333 aa)
 
  0.942
R2601_01125
Uncharacterized protein (216 aa)
 
          0.941
R2601_20316
ABC sugar transporter, inner membrane subunit (356 aa)
 
  0.937
R2601_00185
ABC sugar (Ribose) transporter, inner membrane subunit (335 aa)
 
  0.916
R2601_06168
Ribose high-affinity ABC transporter permease component (325 aa)
 
  0.889
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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