STRINGSTRING
R2601_01125 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01125" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01125Uncharacterized protein (216 aa)    
Predicted Functional Partners:
R2601_01135
Probable sugar ABC transporter permease protein (355 aa)
 
          0.955
R2601_01120
Probable ABC transporter sugar-binding protein (315 aa)
 
          0.941
R2601_01130
Ribose ABC transporter, ATP-binding protein (515 aa)
 
          0.941
R2601_01140
Putative oxidoreductase protein (346 aa)
 
          0.936
R2601_01150
Probable transcriptional regulator protein, GntR family (240 aa)
 
          0.864
R2601_01145
Uncharacterized protein (594 aa)
              0.847
R2601_00940
Periplasmic binding protein/LacI transcriptional regulator (316 aa)
 
          0.827
R2601_01115
Ribulose bisphosphate carboxylaseoxygenase, large subunit protein (421 aa)
 
          0.765
R2601_01160
Uncharacterized protein (275 aa)
 
          0.759
R2601_14920
Uncharacterized protein (225 aa)
   
          0.699
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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