STRINGSTRING
R2601_01160 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01160" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01160Uncharacterized protein (275 aa)    
Predicted Functional Partners:
R2601_01155
Uncharacterized protein (450 aa)
 
          0.942
R2601_01115
Ribulose bisphosphate carboxylaseoxygenase, large subunit protein (421 aa)
 
          0.864
R2601_20586
Putative ribulose bisphosphate carboxylaseoxygenase,large subunit (421 aa)
 
          0.786
R2601_01125
Uncharacterized protein (216 aa)
 
          0.759
R2601_01140
Putative oxidoreductase protein (346 aa)
 
          0.752
R2601_20581
Uncharacterized protein (410 aa)
 
          0.668
R2601_01120
Probable ABC transporter sugar-binding protein (315 aa)
 
          0.666
R2601_01150
Probable transcriptional regulator protein, GntR family (240 aa)
 
          0.563
R2601_02238
Uncharacterized protein (122 aa)
   
          0.540
R2601_20321
ABC sugar transporter, periplasmic sugar binding subunit (331 aa)
   
          0.477
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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