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R2601_01170 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01170" - ABC transporter substrate-binding protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01170ABC transporter substrate-binding protein (539 aa)    
Predicted Functional Partners:
R2601_01185
ABC transporter permease protein (314 aa)
 
          0.932
R2601_01190
Putative oligopeptide ABC transporter, permease component (270 aa)
 
          0.911
R2601_01165
MFS permease (Drug) (428 aa)
              0.859
R2601_01195
Putative oligopeptide ABC transporter, ATP-binding component (360 aa)
 
          0.858
R2601_18138
ABC transporter permease protein (325 aa)
 
          0.834
R2601_18143
ABC transporter permease protein (266 aa)
 
          0.806
R2601_05818
Oligopeptide/dipeptide ABC transporter, permease protein (298 aa)
 
          0.774
R2601_05813
Peptide ABC transporter, permease protein (306 aa)
 
          0.760
R2601_14020
Peptide/opine/nickel uptake family ABC transporter, permease protein (315 aa)
 
          0.722
R2601_01200
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (330 aa)
 
          0.708
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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