STRINGSTRING
R2601_01215 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01215" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01215Uncharacterized protein (187 aa)    
Predicted Functional Partners:
R2601_01210
TRAP-T family transporter, DctM (12 TMs) subunit (442 aa)
            0.862
R2601_01220
TRAP-T family transporter, DctP (Periplasmic binding) subunit (352 aa)
              0.630
R2601_01235
Probable carbon monoxide dehydrogenase medium chain (277 aa)
              0.480
R2601_01230
Putative oxidoreductase protein (166 aa)
              0.480
R2601_01225
Probable carbon monoxide dehydrogenase large chain (793 aa)
              0.480
R2601_01205
Transcriptional regulator (309 aa)
              0.449
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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