STRINGSTRING
R2601_01275 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01275" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01275Uncharacterized protein (264 aa)    
Predicted Functional Partners:
R2601_01280
3-hydroxybutyryl-CoA dehydrogenase (316 aa)
              0.866
R2601_01285
Uncharacterized protein (129 aa)
              0.741
R2601_01270
TRAP transporter, DctP family, putative ; Part of the tripartite ATP-independent periplasmic (TRAP) transport system (351 aa)
              0.617
R2601_05733
Dihydrodipicolinate synthase family protein (309 aa)
   
   
    0.582
dapA
4-hydroxy-tetrahydrodipicolinate synthase ; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (286 aa)
       
    0.576
R2601_02478
Dihydrodipicolinate synthase (295 aa)
       
    0.576
R2601_01653
Dihydrodipicolinate synthetase (300 aa)
       
    0.576
R2601_00025
Dihydrodipicolinate synthase (292 aa)
       
    0.576
R2601_01255
Uncharacterized protein (104 aa)
 
          0.483
R2601_01250
Putative hydrolase (271 aa)
 
          0.482
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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