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R2601_01350 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01350" - NCS1 nucleoside transporter family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01350NCS1 nucleoside transporter family protein (479 aa)    
Predicted Functional Partners:
R2601_18755
HyuE hydantoin racemase (213 aa)
 
        0.766
R2601_01345
Ornithine cyclodeaminase/mu-crystallin family protein (321 aa)
              0.671
R2601_00595
Dihydropyrimidinase (469 aa)
 
        0.574
R2601_11831
Dihydropyrimidine dehydrogenase (434 aa)
 
          0.560
R2601_01355
Threonine aldolase, low-specificity (387 aa)
   
        0.548
R2601_11809
Dihydropyrimidinase (484 aa)
 
        0.546
R2601_13389
N-carbamoyl-L-amino acid amidohydrolase (407 aa)
 
        0.535
R2601_20361
N-carbamoyl-L-amino acid amidohydrolase (409 aa)
 
        0.534
R2601_01365
Serine--glyoxylate transaminase, putative (395 aa)
 
     
  0.507
R2601_05993
Acetylornithine deacetylase (405 aa)
 
        0.488
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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