STRINGSTRING
R2601_01468 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01468" - ISPsy21, transposase orfA in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01468ISPsy21, transposase orfA (44 aa)    
Predicted Functional Partners:
R2601_01463
Integrase, catalytic region (299 aa)
 
   
  0.977
R2601_11739
Uncharacterized protein (112 aa)
   
          0.778
R2601_01473
Uncharacterized protein (102 aa)
              0.574
R2601_10304
Helix-turn-helix, Fis-type protein (326 aa)
 
   
  0.463
R2601_01488
Peptide ABC transporter, ATP-binding protein (346 aa)
              0.434
R2601_01483
Peptide ABC transporter, ATP-binding protein (342 aa)
              0.434
R2601_01478
Oxidoreductase (440 aa)
              0.434
R2601_01493
ABC transporter, membrane spanning protein (Oligopeptide) (295 aa)
              0.424
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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